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LOC129703570 heparan-sulfate 6-O-sulfotransferase 1-like [ Leucoraja erinaceus (little skate) ]

Gene ID: 129703570, updated on 12-Oct-2024

Summary

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Gene symbol
LOC129703570
Gene description
heparan-sulfate 6-O-sulfotransferase 1-like
See related
EnsemblRapid:ENSLERG00010019159
Gene type
protein coding
RefSeq status
MODEL
Organism
Leucoraja erinaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
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Genomic context

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See LOC129703570 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) 14 NC_073390.1 (35597051..35890314)

Chromosome 14 - NC_073390.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC129703796 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1 Neighboring gene ephrin type-A receptor 3-like Neighboring gene uncharacterized LOC129703573

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073390.1 Chromosome 14 Reference Leri_hhj_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Leri_hhj_1 Primary Assembly

Genomic

  1. NC_073390.1 Reference Leri_hhj_1 Primary Assembly

    Range
    35597051..35890314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055646157.1 → XP_055502132.1  heparan-sulfate 6-O-sulfotransferase 1-like

    Related
    ENSLERP00010033777.1, ENSLERT00010050037.1
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases