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LOC129703329 cathepsin O-like [ Leucoraja erinaceus (little skate) ]

Gene ID: 129703329, updated on 12-Oct-2024

Summary

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Gene symbol
LOC129703329
Gene description
cathepsin O-like
See related
EnsemblRapid:ENSLERG00010026038
Gene type
protein coding
RefSeq status
MODEL
Organism
Leucoraja erinaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
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Genomic context

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See LOC129703329 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) 1 NC_073377.1 (150071450..150103016, complement)

Chromosome 1 - NC_073377.1Genomic Context describing neighboring genes Neighboring gene guanylate cyclase 1 soluble subunit beta 1 Neighboring gene tryptophan 2,3-dioxygenase-like Neighboring gene U5 small nuclear ribonucleoprotein 40 kDa protein-like Neighboring gene platelet derived growth factor c Neighboring gene glycine receptor, beta b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073377.1 Chromosome 1 Reference Leri_hhj_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cathepsin O-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Leri_hhj_1 Primary Assembly

Genomic

  1. NC_073377.1 Reference Leri_hhj_1 Primary Assembly

    Range
    150071450..150103016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055645697.1 → XP_055501672.1  cathepsin O-like

    Related
    ENSLERP00010049696.1, ENSLERT00010070496.1

RNA

  1. XR_008724545.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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