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LOC129702089 clathrin light chain A-like [ Leucoraja erinaceus (little skate) ]

Gene ID: 129702089, updated on 12-Oct-2024

Summary

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Gene symbol
LOC129702089
Gene description
clathrin light chain A-like
See related
EnsemblRapid:ENSLERG00010028097
Gene type
protein coding
RefSeq status
MODEL
Organism
Leucoraja erinaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
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Genomic context

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See LOC129702089 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) 1 NC_073377.1 (134587296..134664664)

Chromosome 1 - NC_073377.1Genomic Context describing neighboring genes Neighboring gene ureidoglycolate lyase Neighboring gene uncharacterized LOC129702038 Neighboring gene SUN domain-containing protein 2-like Neighboring gene uncharacterized LOC129702081 Neighboring gene glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase Neighboring gene uncharacterized LOC129702104

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073377.1 Chromosome 1 Reference Leri_hhj_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic endocytic zone cytoplasmic component IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clathrin light chain A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Leri_hhj_1 Primary Assembly

Genomic

  1. NC_073377.1 Reference Leri_hhj_1 Primary Assembly

    Range
    134587296..134664664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055643646.1 → XP_055499621.1  clathrin light chain A-like isoform X2

    Related
    ENSLERP00010054079.1, ENSLERT00010076492.1

  2. XM_055643665.1 → XP_055499640.1  clathrin light chain A-like isoform X4

  3. XM_055643637.1 → XP_055499612.1  clathrin light chain A-like isoform X1

    Related
    ENSLERP00010054085.1, ENSLERT00010076498.1

  4. XM_055643655.1 → XP_055499630.1  clathrin light chain A-like isoform X3

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases