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LOC129698092 gamma-sarcoglycan-like [ Leucoraja erinaceus (little skate) ]

Gene ID: 129698092, updated on 12-Oct-2024

Summary

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Gene symbol
LOC129698092
Gene description
gamma-sarcoglycan-like
See related
EnsemblRapid:ENSLERG00010030320
Gene type
protein coding
RefSeq status
MODEL
Organism
Leucoraja erinaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
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Genomic context

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See LOC129698092 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) 6 NC_073382.1 (48451395..48748205, complement)

Chromosome 6 - NC_073382.1Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily member 19-like Neighboring gene U2 spliceosomal RNA Neighboring gene sacsin molecular chaperone Neighboring gene fibroblast growth factor 9 Neighboring gene mitochondrial calcium uptake 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073382.1 Chromosome 6 Reference Leri_hhj_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Leri_hhj_1 Primary Assembly

Genomic

  1. NC_073382.1 Reference Leri_hhj_1 Primary Assembly

    Range
    48451395..48748205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055636962.1 → XP_055492937.1  gamma-sarcoglycan-like

    Related
    ENSLERP00010056703.1, ENSLERT00010081870.1

  2. XM_055636965.1 → XP_055492940.1  gamma-sarcoglycan-like

  3. XM_055636959.1 → XP_055492934.1  gamma-sarcoglycan-like

  4. XM_055636963.1 → XP_055492938.1  gamma-sarcoglycan-like

  5. XM_055636964.1 → XP_055492939.1  gamma-sarcoglycan-like

  6. XM_055636966.1 → XP_055492941.1  gamma-sarcoglycan-like

  7. XM_055636967.1 → XP_055492942.1  gamma-sarcoglycan-like

    Related
    ENSLERP00010056696.1, ENSLERT00010081859.1

  8. XM_055636961.1 → XP_055492936.1  gamma-sarcoglycan-like

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases