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chpf2 chondroitin polymerizing factor 2 [ Leucoraja erinaceus (little skate) ]

Gene ID: 129696384, updated on 12-Oct-2024

Summary

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Gene symbol
chpf2
Gene description
chondroitin polymerizing factor 2
See related
EnsemblRapid:ENSLERG00010026254
Gene type
protein coding
RefSeq status
MODEL
Organism
Leucoraja erinaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
Orthologs
human zebrafish all
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Genomic context

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See chpf2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) 4 NC_073380.1 (51954005..51981441)

Chromosome 4 - NC_073380.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette sub-family F member 2-like Neighboring gene zinc-binding protein A33-like Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3-like Neighboring gene acid-sensing ion channel 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073380.1 Chromosome 4 Reference Leri_hhj_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Leri_hhj_1 Primary Assembly

Genomic

  1. NC_073380.1 Reference Leri_hhj_1 Primary Assembly

    Range
    51954005..51981441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055634243.1 → XP_055490218.1  chondroitin sulfate glucuronyltransferase

    Related
    ENSLERP00010050195.1, ENSLERT00010071131.1
Nucleotide Protein
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Gene LinkOut

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