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chrne cholinergic receptor, nicotinic, epsilon [ Leucoraja erinaceus (little skate) ]

Gene ID: 129694242, updated on 12-Oct-2024

Summary

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Gene symbol
chrne
Gene description
cholinergic receptor, nicotinic, epsilon
See related
EnsemblRapid:ENSLERG00010000719
Gene type
protein coding
RefSeq status
MODEL
Organism
Leucoraja erinaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
Orthologs
zebrafish all
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Genomic context

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See chrne in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) Unplaced Scaffold NW_026576498.1 (397492..431808)

NW_026576498.1Genomic Context describing neighboring genes Neighboring gene RPA-related protein RADX-like Neighboring gene sperm-egg fusion protein TMEM95-like Neighboring gene eukaryotic translation initiation factor 4E type 2-like Neighboring gene hydroxysteroid (20-beta) dehydrogenase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026576498 Unplaced Scaffold Reference Leri_hhj_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Leri_hhj_1 Primary Assembly

Genomic

  1. NW_026576498.1 Reference Leri_hhj_1 Primary Assembly

    Range
    397492..431808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055630955.1 → XP_055486930.1  acetylcholine receptor subunit epsilon

    Related
    ENSLERP00010000839.1, ENSLERT00010001586.1
Nucleotide Protein
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Gene LinkOut

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