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SGCD sarcoglycan delta [ Nyctereutes procyonoides (raccoon dog) ]

Gene ID: 129509617, updated on 26-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Locus tag
NYPRO_LOCUS8226
Gene type
protein coding
RefSeq status
MODEL
Organism
Nyctereutes procyonoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Nyctereutes
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_04 current NYPRO_anot_genome (GCF_905146905.1) Unplaced Scaffold NW_026575046.1 (33943151..34852553)

NW_026575046.1Genomic Context describing neighboring genes Neighboring gene methylosome subunit pICln-like Neighboring gene acyl carrier protein, mitochondrial-like Neighboring gene uncharacterized LOC129509795 Neighboring gene U4 spliceosomal RNA Neighboring gene T cell immunoglobulin and mucin domain containing 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026575046 Unplaced Scaffold Reference NYPRO_anot_genome Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_905146905.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NYPRO_anot_genome Primary Assembly

Genomic

  1. NW_026575046.1 Reference NYPRO_anot_genome Primary Assembly

    Range
    33943151..34852553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055325395.1 → XP_055181370.1  delta-sarcoglycan

  2. XM_055325394.1 → XP_055181369.1  delta-sarcoglycan

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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