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SC5D sterol-C5-desaturase [ Nyctereutes procyonoides (raccoon dog) ]

Gene ID: 129497504, updated on 26-Mar-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
Locus tag
NYPRO_LOCUS22869
Gene type
protein coding
RefSeq status
MODEL
Organism
Nyctereutes procyonoides
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Nyctereutes
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_04 current NYPRO_anot_genome (GCF_905146905.1) Unplaced Scaffold NW_026575140.1 (76834920..76851822)

NW_026575140.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129497375 Neighboring gene tubulin-specific chaperone cofactor E-like protein Neighboring gene sortilin related receptor 1 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026575140 Unplaced Scaffold Reference NYPRO_anot_genome Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_905146905.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NYPRO_anot_genome Primary Assembly

Genomic

  1. NW_026575140.1 Reference NYPRO_anot_genome Primary Assembly

    Range
    76834920..76851822
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055306423.1 → XP_055162398.1  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A811ZMZ7

  2. XM_055306422.1 → XP_055162397.1  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A811ZMZ7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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