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CDK5RAP1 CDK5 regulatory subunit associated protein 1 [ Symphalangus syndactylus (siamang) ]

Gene ID: 129474342, updated on 18-Jul-2024

Summary

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Gene symbol
CDK5RAP1
Gene description
CDK5 regulatory subunit associated protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Symphalangus syndactylus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Symphalangus
Orthologs
human mouse all
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Genomic context

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See CDK5RAP1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_07 current NHGRI_mSymSyn1-v2.1_pri (GCF_028878055.3) 24 NC_072446.2 (39144440..39184402)
RS_2023_03 previous assembly NHGRI_mSymSyn1-v1.1-hic.freeze_pri (GCF_028878055.1) 24 NC_072446.1 (36421830..36461796)

Chromosome 24 - NC_072446.2Genomic Context describing neighboring genes Neighboring gene selenoprotein K-like Neighboring gene syntrophin alpha 1 Neighboring gene BPI fold containing family B member 1 Neighboring gene uncharacterized LOC129474584 Neighboring gene BPI fold containing family A member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylthiotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial tRNA methylthiotransferase CDK5RAP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028878055.3-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mSymSyn1-v2.1_pri Primary Assembly

Genomic

  1. NC_072446.2 Reference NHGRI_mSymSyn1-v2.1_pri Primary Assembly

    Range
    39144440..39184402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055265593.1 → XP_055121568.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X1

  2. XM_055265597.1 → XP_055121572.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X5

  3. XM_063633746.1 → XP_063489816.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X2

  4. XM_063633748.1 → XP_063489818.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X2

  5. XM_063633749.1 → XP_063489819.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X3

  6. XM_055265596.2 → XP_055121571.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X3

  7. XM_063633750.1 → XP_063489820.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X6

  8. XM_063633747.1 → XP_063489817.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X4

  9. XM_063633751.1 → XP_063489821.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X7

Nucleotide Protein
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