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trpn1 transient receptor potential cation channel, subfamily N, member 1 [ Misgurnus anguillicaudatus (oriental weatherfish) ]

Gene ID: 129456103, updated on 10-Apr-2024

Summary

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Gene symbol
trpn1
Gene description
transient receptor potential cation channel, subfamily N, member 1
See related
EnsemblRapid:ENSIRMG00000000301
Gene type
protein coding
RefSeq status
MODEL
Organism
Misgurnus anguillicaudatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cobitidae; Cobitinae; Misgurnus
Orthologs
zebrafish all
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Genomic context

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See trpn1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_04 current HAU_Mang_1.0 (GCF_027580225.1) 12 NC_073348.1 (40280705..40323008)

Chromosome 12 - NC_073348.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 20 Neighboring gene 3-oxoacyl-ACP synthase, mitochondrial Neighboring gene G-protein coupled receptor 20 Neighboring gene solute carrier family 45 member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073348.1 Chromosome 12 Reference HAU_Mang_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transient receptor potential cation channel, subfamily N, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027580225.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HAU_Mang_1.0 Primary Assembly

Genomic

  1. NC_073348.1 Reference HAU_Mang_1.0 Primary Assembly

    Range
    40280705..40323008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055220924.1 → XP_055076899.1  transient receptor potential cation channel, subfamily N, member 1 isoform X1

    Related
    ENSIRMP00000000377.1, ENSIRMT00000000652.1

  2. XM_055220925.1 → XP_055076900.1  transient receptor potential cation channel, subfamily N, member 1 isoform X2

Nucleotide Protein
Heading Accession and Version

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