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ccn4a cellular communication network factor 4a [ Misgurnus anguillicaudatus (oriental weatherfish) ]

Gene ID: 129456102, updated on 10-Apr-2024

Summary

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Gene symbol
ccn4a
Gene description
cellular communication network factor 4a
See related
EnsemblRapid:ENSIRMG00000027818
Gene type
protein coding
RefSeq status
MODEL
Organism
Misgurnus anguillicaudatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cobitidae; Cobitinae; Misgurnus
Orthologs
zebrafish all
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Genomic context

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See ccn4a in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_04 current HAU_Mang_1.0 (GCF_027580225.1) 12 NC_073348.1 (18268486..18275665)

Chromosome 12 - NC_073348.1Genomic Context describing neighboring genes Neighboring gene interferon-induced very large GTPase 1-like Neighboring gene Src like adaptor 1a Neighboring gene N-myc downstream regulated 1a Neighboring gene N-terminal glutamine amidase 1 Neighboring gene proteasome 20S subunit alpha 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073348.1 Chromosome 12 Reference HAU_Mang_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellular communication network factor 4a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027580225.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HAU_Mang_1.0 Primary Assembly

Genomic

  1. NC_073348.1 Reference HAU_Mang_1.0 Primary Assembly

    Range
    18268486..18275665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055220923.1 → XP_055076898.1  cellular communication network factor 4a

    Related
    ENSIRMP00000046494.1, ENSIRMT00000064226.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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