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c1galt1lb core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like b [ Misgurnus anguillicaudatus (oriental weatherfish) ]

Gene ID: 129450294, updated on 10-Apr-2024

Summary

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Gene symbol
c1galt1lb
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like b
See related
EnsemblRapid:ENSIRMG00000038455
Gene type
protein coding
RefSeq status
MODEL
Organism
Misgurnus anguillicaudatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cobitidae; Cobitinae; Misgurnus
Orthologs
zebrafish all
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Genomic context

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See c1galt1lb in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_04 current HAU_Mang_1.0 (GCF_027580225.1) 9 NC_073345.1 (13026281..13038038)

Chromosome 9 - NC_073345.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1b Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene tachykinin precursor 3b Neighboring gene apolipoprotein F Neighboring gene signal transducer and activator of transcription 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073345.1 Chromosome 9 Reference HAU_Mang_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027580225.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HAU_Mang_1.0 Primary Assembly

Genomic

  1. NC_073345.1 Reference HAU_Mang_1.0 Primary Assembly

    Range
    13026281..13038038
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055212953.1 → XP_055068928.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

    Related
    ENSIRMP00000060961.1, ENSIRMT00000089431.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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