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capn3a calpain 3a, (p94) [ Poeciliopsis prolifica (blackstripe livebearer) ]

Gene ID: 129377228, updated on 26-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Gene type
protein coding
RefSeq status
MODEL
Organism
Poeciliopsis prolifica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poeciliopsis
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_04 current Auburn_PproV2 (GCF_027474105.1) Unplaced Scaffold NW_026562422.1 (3668875..3682720, complement)

NW_026562422.1Genomic Context describing neighboring genes Neighboring gene neudesin neurotrophic factor Neighboring gene proton activated chloride channel 1 Neighboring gene zinc finger protein 106a Neighboring gene glucosidase, alpha; neutral C Neighboring gene transmembrane protein 87A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026562422 Unplaced Scaffold Reference Auburn_PproV2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027474105.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Auburn_PproV2

Genomic

  1. NW_026562422.1 Reference Auburn_PproV2

    Range
    3668875..3682720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055057023.1 → XP_054912998.1  calpain-3 isoform X1

  2. XM_055057025.1 → XP_054913000.1  calpain-3 isoform X3

  3. XM_055057024.1 → XP_054912999.1  calpain-3 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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