U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC129374289 TNF receptor-associated factor 2-like [ Poeciliopsis prolifica (blackstripe livebearer) ]

Gene ID: 129374289, updated on 16-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC129374289
Gene description
TNF receptor-associated factor 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Poeciliopsis prolifica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poeciliopsis
Also known as
TRAF2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC129374289 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current Auburn_PproV2 (GCF_027474105.1) Unplaced Scaffold NW_026562410.1 (4643894..4655548, complement)

NW_026562410.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase, regulatory subunit 1 (alpha) Neighboring gene uncharacterized LOC129374117 Neighboring gene tenascin Ca Neighboring gene GRAM domain-containing protein 2B-like Neighboring gene uncharacterized LOC129374312

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_026562410 Unplaced Scaffold Reference Auburn_PproV2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
TNF receptor-associated factor 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027474105.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Auburn_PproV2

Genomic

  1. NW_026562410.1 Reference Auburn_PproV2

    Range
    4643894..4655548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055052633.1 → XP_054908608.1  TNF receptor-associated factor 2-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.