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sgcg sarcoglycan, gamma [ Poeciliopsis prolifica (blackstripe livebearer) ]

Gene ID: 129359381, updated on 26-Mar-2024

Summary

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Gene symbol
sgcg
Gene description
sarcoglycan, gamma
Gene type
protein coding
RefSeq status
MODEL
Organism
Poeciliopsis prolifica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poeciliopsis
Orthologs
human zebrafish all
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Genomic context

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See sgcg in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_04 current Auburn_PproV2 (GCF_027474105.1) Unplaced Scaffold NW_026562379.1 (7157709..7171989, complement)

NW_026562379.1Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily member 19-like Neighboring gene sacsin molecular chaperone Neighboring gene ribosomal protein S25 Neighboring gene trafficking protein particle complex subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026562379 Unplaced Scaffold Reference Auburn_PproV2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027474105.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Auburn_PproV2

Genomic

  1. NW_026562379.1 Reference Auburn_PproV2

    Range
    7157709..7171989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055028966.1 → XP_054884941.1  gamma-sarcoglycan

  2. XM_055028965.1 → XP_054884940.1  gamma-sarcoglycan

  3. XM_055028967.1 → XP_054884942.1  gamma-sarcoglycan

RNA

  1. XR_008605890.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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