U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC129355495 aspartyl/asparaginyl beta-hydroxylase-like [ Poeciliopsis prolifica (blackstripe livebearer) ]

Gene ID: 129355495, updated on 16-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC129355495
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Poeciliopsis prolifica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poeciliopsis
Also known as
ASPH
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC129355495 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_04 current Auburn_PproV2 (GCF_027474105.1) Unplaced Scaffold NW_026562511.1 (400536..424444, complement)

NW_026562511.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase RIO3-like Neighboring gene clavesin-1-like Neighboring gene sodium channel protein type 2 subunit alpha-like Neighboring gene sodium channel protein type 5 subunit alpha-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_026562511 Unplaced Scaffold Reference Auburn_PproV2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_027474105.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Auburn_PproV2

Genomic

  1. NW_026562511.1 Reference Auburn_PproV2

    Range
    400536..424444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055025086.1 → XP_054881061.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

  2. XM_055025088.1 → XP_054881063.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

  3. XM_055025087.1 → XP_054881062.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

  4. XM_055025089.1 → XP_054881064.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

  5. XM_055025092.1 → XP_054881067.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X7

  6. XM_055025090.1 → XP_054881065.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

  7. XM_055025093.1 → XP_054881068.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X8

  8. XM_055025091.1 → XP_054881066.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X6

  9. XM_055025094.1 → XP_054881069.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X9

  10. XM_055025095.1 → XP_054881070.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X10

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.