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SGCD sarcoglycan delta [ Eublepharis macularius ]

Gene ID: 129327330, updated on 3-Apr-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Eublepharis macularius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Eublepharidae; Eublepharinae; Eublepharis
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current MPM_Emac_v1.0 (GCF_028583425.1) 4 NC_072793.1 (87739584..88106777)

Chromosome 4 - NC_072793.1Genomic Context describing neighboring genes Neighboring gene gem nuclear organelle associated protein 5 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4-like Neighboring gene mediator complex subunit 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072793.1 Chromosome 4 Reference MPM_Emac_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028583425.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MPM_Emac_v1.0 Primary Assembly

Genomic

  1. NC_072793.1 Reference MPM_Emac_v1.0 Primary Assembly

    Range
    87739584..88106777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054975881.1 → XP_054831856.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0AA97KVB7

  2. XM_054975882.1 → XP_054831857.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0AA97KWI2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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