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LOC129311428 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [ Prosopis cineraria ]

Gene ID: 129311428, updated on 16-Nov-2023

Summary

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Gene symbol
LOC129311428
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Prosopis cineraria
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Caesalpinioideae; mimosoid clade; Mimoseae; Prosopis
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Genomic context

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See LOC129311428 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2901754v1 (GCF_029017545.1) Unplaced Scaffold NW_026555336.1 (40186001..40192531, complement)

NW_026555336.1Genomic Context describing neighboring genes Neighboring gene RNA-dependent RNA polymerase 1 Neighboring gene MACPF domain-containing protein At1g14780 Neighboring gene putative pentatricopeptide repeat-containing protein At3g23330 Neighboring gene beta-fructofuranosidase, insoluble isoenzyme CWINV3-like Neighboring gene uncharacterized LOC129311127

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026555336 Unplaced Scaffold Reference ASM2901754v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029017545.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2901754v1 Primary Assembly

Genomic

  1. NW_026555336.1 Reference ASM2901754v1 Primary Assembly

    Range
    40186001..40192531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054953750.1 → XP_054809725.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases