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LOC129309610 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Prosopis cineraria ]

Gene ID: 129309610, updated on 16-Nov-2023

Summary

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Gene symbol
LOC129309610
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Prosopis cineraria
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Caesalpinioideae; mimosoid clade; Mimoseae; Prosopis
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Genomic context

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See LOC129309610 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2901754v1 (GCF_029017545.1) Unplaced Scaffold NW_026555335.1 (40821585..40827549)

NW_026555335.1Genomic Context describing neighboring genes Neighboring gene spermidine synthase 1-like Neighboring gene uncharacterized LOC129307908 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 2 Neighboring gene uncharacterized LOC129309080

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026555335 Unplaced Scaffold Reference ASM2901754v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029017545.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2901754v1 Primary Assembly

Genomic

  1. NW_026555335.1 Reference ASM2901754v1 Primary Assembly

    Range
    40821585..40827549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054951246.1 → XP_054807221.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

  2. XM_054951250.1 → XP_054807225.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

  3. XM_054951244.1 → XP_054807219.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

  4. XM_054951245.1 → XP_054807220.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

  5. XM_054951247.1 → XP_054807222.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

  6. XM_054951249.1 → XP_054807224.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

  7. XM_054951248.1 → XP_054807223.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

Nucleotide Protein
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