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LOC129309576 probable beta-1,4-xylosyltransferase IRX10L [ Prosopis cineraria ]

Gene ID: 129309576, updated on 16-Nov-2023

Summary

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Gene symbol
LOC129309576
Gene description
probable beta-1,4-xylosyltransferase IRX10L
Gene type
protein coding
RefSeq status
MODEL
Organism
Prosopis cineraria
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Caesalpinioideae; mimosoid clade; Mimoseae; Prosopis
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Genomic context

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See LOC129309576 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2901754v1 (GCF_029017545.1) Unplaced Scaffold NW_026555335.1 (38269401..38271542, complement)

NW_026555335.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129309824 Neighboring gene uncharacterized LOC129309766 Neighboring gene ycf20-like protein Neighboring gene uncharacterized LOC129307730

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026555335 Unplaced Scaffold Reference ASM2901754v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-beta-D-xylan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucuronoxylan glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029017545.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2901754v1 Primary Assembly

Genomic

  1. NW_026555335.1 Reference ASM2901754v1 Primary Assembly

    Range
    38269401..38271542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054951197.1 → XP_054807172.1  probable beta-1,4-xylosyltransferase IRX10L

Nucleotide Protein
Heading Accession and Version

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