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LOC129304855 carboxyl-terminal-processing peptidase 1, chloroplastic [ Prosopis cineraria ]

Gene ID: 129304855, updated on 16-Nov-2023

Summary

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Gene symbol
LOC129304855
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Prosopis cineraria
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Caesalpinioideae; mimosoid clade; Mimoseae; Prosopis
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Genomic context

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See LOC129304855 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2901754v1 (GCF_029017545.1) Unplaced Scaffold NW_026555334.1 (27400777..27406329, complement)

NW_026555334.1Genomic Context describing neighboring genes Neighboring gene cold-regulated 413 inner membrane protein 1, chloroplastic-like Neighboring gene major pollen allergen Ole e 10-like Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene uncharacterized LOC129305495 Neighboring gene uncharacterized LOC129305809

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026555334 Unplaced Scaffold Reference ASM2901754v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: carboxyl-terminal-processing peptidase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029017545.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2901754v1 Primary Assembly

Genomic

  1. NW_026555334.1 Reference ASM2901754v1 Primary Assembly

    Range
    27400777..27406329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054944681.1 → XP_054800656.1  LOW QUALITY PROTEIN: carboxyl-terminal-processing peptidase 1, chloroplastic

Nucleotide Protein
Heading Accession and Version

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