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LOC129281811 chondroitin sulfate N-acetylgalactosaminyltransferase 1-like [ Lytechinus pictus (painted urchin) ]

Gene ID: 129281811, updated on 2-Apr-2024

Summary

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Gene symbol
LOC129281811
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1-like
See related
EnsemblRapid:LOC129281811
Gene type
protein coding
RefSeq status
MODEL
Organism
Lytechinus pictus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus
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Genomic context

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See LOC129281811 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_03 current Lp3.0 (GCF_037042905.1) 18 NC_087262.1 (24982178..24987891, complement)
RS_2023_03 previous assembly UCSD_Lpic_2.1 (GCF_015342785.2) 18 NC_067111.1 (1375235..1377615)

Chromosome 18 - NC_087262.1Genomic Context describing neighboring genes Neighboring gene zinc finger MIZ domain-containing protein 1-like Neighboring gene zinc finger MIZ domain-containing protein 1-like Neighboring gene outer mitochondrial transmembrane helix translocase-like Neighboring gene growth hormone-inducible transmembrane protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037042905.1-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lp3.0

Genomic

  1. NC_087262.1 Reference Lp3.0

    Range
    24982178..24987891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054917729.2 → XP_054773704.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

    Related
    XP_054773704.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases