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LOC129262885 carbohydrate sulfotransferase 11-like [ Lytechinus pictus (painted urchin) ]

Gene ID: 129262885, updated on 2-Apr-2024

Summary

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Gene symbol
LOC129262885
Gene description
carbohydrate sulfotransferase 11-like
See related
EnsemblRapid:LOC129262885 EnsemblRapid:LOC129262888
Gene type
protein coding
RefSeq status
MODEL
Organism
Lytechinus pictus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus
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Genomic context

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See LOC129262885 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_03 current Lp3.0 (GCF_037042905.1) 6 NC_087250.1 (16632626..16643306)
RS_2023_03 previous assembly UCSD_Lpic_2.1 (GCF_015342785.2) 6 NC_067099.1 (18000484..18006705)

Chromosome 6 - NC_087250.1Genomic Context describing neighboring genes Neighboring gene histamine N-methyltransferase A-like Neighboring gene glycine N-methyltransferase-like Neighboring gene glycine N-methyltransferase-like Neighboring gene heparan sulfate glucosamine 3-O-sulfotransferase 1-like Neighboring gene 26S proteasome non-ATPase regulatory subunit 2-like Neighboring gene uncharacterized LOC129263733

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037042905.1-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lp3.0

Genomic

  1. NC_087250.1 Reference Lp3.0

    Range
    16632626..16643306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064101048.1 → XP_063957118.1  carbohydrate sulfotransferase 11-like isoform X1

  2. XM_054900862.2 → XP_054756837.2  carbohydrate sulfotransferase 11-like isoform X1

  3. XM_064101051.1 → XP_063957121.1  carbohydrate sulfotransferase 11-like isoform X2

  4. XM_064101050.1 → XP_063957120.1  carbohydrate sulfotransferase 11-like isoform X1

  5. XM_064101053.1 → XP_063957123.1  carbohydrate sulfotransferase 11-like isoform X2

  6. XM_064101049.1 → XP_063957119.1  carbohydrate sulfotransferase 11-like isoform X1

  7. XM_064101052.1 → XP_063957122.1  carbohydrate sulfotransferase 11-like isoform X2

Nucleotide Protein
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Molecular Biology Databases