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LOC129257277 carbohydrate sulfotransferase 11-like [ Lytechinus pictus (painted urchin) ]

Gene ID: 129257277, updated on 2-Apr-2024

Summary

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Gene symbol
LOC129257277
Gene description
carbohydrate sulfotransferase 11-like
See related
EnsemblRapid:LOC129256328 EnsemblRapid:LOC129257277 EnsemblRapid:LOC129277546
Gene type
protein coding
RefSeq status
MODEL
Organism
Lytechinus pictus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Temnopleuroida; Toxopneustidae; Lytechinus
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Genomic context

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See LOC129257277 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_03 current Lp3.0 (GCF_037042905.1) 3 NC_087247.1 (39177104..39218505)
RS_2023_03 previous assembly UCSD_Lpic_2.1 (GCF_015342785.2) 3 NC_067096.1 (48047217..48055372, complement)

Chromosome 3 - NC_087247.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129274592 Neighboring gene abl interactor 2-like Neighboring gene carbohydrate sulfotransferase 11-like Neighboring gene carbohydrate sulfotransferase 11-like Neighboring gene uncharacterized LOC135153750

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037042905.1-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lp3.0

Genomic

  1. NC_087247.1 Reference Lp3.0

    Range
    39177104..39218505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064097013.1 → XP_063953083.1  carbohydrate sulfotransferase 11-like isoform X1

  2. XM_064097014.1 → XP_063953084.1  carbohydrate sulfotransferase 11-like isoform X2

  3. XM_064097015.1 → XP_063953085.1  carbohydrate sulfotransferase 11-like isoform X3

RNA

  1. XR_010293075.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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