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LOC129115605 phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit [ Anoplopoma fimbria (sablefish) ]

Gene ID: 129115605, updated on 16-Nov-2023

Summary

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Gene symbol
LOC129115605
Gene description
phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Anoplopoma fimbria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
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Genomic context

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See LOC129115605 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 3 NC_072451.1 (22221572..22234756, complement)

Chromosome 3 - NC_072451.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 8-like 2 Neighboring gene potassium calcium-activated channel subfamily M regulatory beta subunit 3 Neighboring gene potassium large conductance calcium-activated channel, subfamily M, beta member 2a Neighboring gene TBL1X/Y related 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072451.1 Chromosome 3 Reference Afim_UVic_2022

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 1-phosphatidylinositol-4-phosphate 3-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol 3-kinase/protein kinase B signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-3-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class IA IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phosphatidylinositol 3-kinase complex, class IB IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Afim_UVic_2022

Genomic

  1. NC_072451.1 Reference Afim_UVic_2022

    Range
    22221572..22234756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054626973.1 → XP_054482948.1  phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform

  2. XM_054626972.1 → XP_054482947.1  phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases