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tpi1b triosephosphate isomerase 1b [ Anoplopoma fimbria (sablefish) ]

Gene ID: 129109571, updated on 26-Mar-2024

Summary

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Gene symbol
tpi1b
Gene description
triosephosphate isomerase 1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Anoplopoma fimbria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
Orthologs
human zebrafish all
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Genomic context

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See tpi1b in Genome Data Viewer
Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 20 NC_072468.1 (17885302..17890225, complement)

Chromosome 20 - NC_072468.1Genomic Context describing neighboring genes Neighboring gene atrophin 1 Neighboring gene zinc finger and SCAN domain-containing protein 2-like Neighboring gene U7 small nuclear RNA Neighboring gene lysophosphatidylcholine acyltransferase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072468.1 Chromosome 20 Reference Afim_UVic_2022

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables triose-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerol catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
triosephosphate isomerase B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Afim_UVic_2022

Genomic

  1. NC_072468.1 Reference Afim_UVic_2022

    Range
    17885302..17890225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054621672.1 → XP_054477647.1  triosephosphate isomerase B

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases