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tmtc2b transmembrane O-mannosyltransferase targeting cadherins 2b [ Anoplopoma fimbria (sablefish) ]

Gene ID: 129108197, updated on 26-Mar-2024

Summary

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Gene symbol
tmtc2b
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Anoplopoma fimbria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
Orthologs
zebrafish all
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Genomic context

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See tmtc2b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 19 NC_072467.1 (9414522..9504126)

Chromosome 19 - NC_072467.1Genomic Context describing neighboring genes Neighboring gene protein arginine N-methyltransferase 8-B Neighboring gene calcium release activated channel regulator 2Aa Neighboring gene protein FAM180A-like Neighboring gene solute carrier family 23 member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072467.1 Chromosome 19 Reference Afim_UVic_2022

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Afim_UVic_2022

Genomic

  1. NC_072467.1 Reference Afim_UVic_2022

    Range
    9414522..9504126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054619901.1 → XP_054475876.1  protein O-mannosyl-transferase TMTC2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases