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LOC129107211 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4-like [ Anoplopoma fimbria (sablefish) ]

Gene ID: 129107211, updated on 16-Nov-2023

Summary

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Gene symbol
LOC129107211
Gene description
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Anoplopoma fimbria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
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Genomic context

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See LOC129107211 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
41
Annotation release Status Assembly Chr Location
RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 18 NC_072466.1 (4749302..4813023)

Chromosome 18 - NC_072466.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 2b Neighboring gene phospholipase C beta 1-like Neighboring gene lysosomal associated membrane protein family member 5 Neighboring gene p21 protein (Cdc42/Rac)-activated kinase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072466.1 Chromosome 18 Reference Afim_UVic_2022

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Afim_UVic_2022

Genomic

  1. NC_072466.1 Reference Afim_UVic_2022

    Range
    4749302..4813023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054618631.1 → XP_054474606.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4-like

  2. XM_054618633.1 → XP_054474608.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4-like

  3. XM_054618632.1 → XP_054474607.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4-like

Nucleotide Protein
Heading Accession and Version

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