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itpkb inositol-trisphosphate 3-kinase B [ Anoplopoma fimbria (sablefish) ]

Gene ID: 129106984, updated on 12-Sep-2024

Summary

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Gene symbol
itpkb
Gene description
inositol-trisphosphate 3-kinase B
Gene type
protein coding
RefSeq status
MODEL
Organism
Anoplopoma fimbria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
Orthologs
zebrafish all
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Genomic context

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See itpkb in Genome Data Viewer
Location:
chromosome: 18
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 18 NC_072466.1 (6350807..6380791)

Chromosome 18 - NC_072466.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 200A Neighboring gene uncharacterized LOC129107374 Neighboring gene erythrocyte membrane protein band 4.1 like 2 Neighboring gene coenzyme Q8A, genome duplicate a Neighboring gene stum, mechanosensory transduction mediator homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072466.1 Chromosome 18 Reference Afim_UVic_2022

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol tetrakisphosphate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol-1,4,5-trisphosphate 3-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inositol-trisphosphate 3-kinase B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Afim_UVic_2022

Genomic

  1. NC_072466.1 Reference Afim_UVic_2022

    Range
    6350807..6380791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054618304.1 → XP_054474279.1  inositol-trisphosphate 3-kinase B isoform X1

  2. XM_054618305.1 → XP_054474280.1  inositol-trisphosphate 3-kinase B isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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