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hcfc1a host cell factor C1a [ Anoplopoma fimbria (sablefish) ]

Gene ID: 129106458, updated on 26-Mar-2024

Summary

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Gene symbol
hcfc1a
Gene description
host cell factor C1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Anoplopoma fimbria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
Orthologs
zebrafish all
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Genomic context

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See hcfc1a in Genome Data Viewer
Location:
chromosome: 17
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 17 NC_072465.1 (6707918..6720458, complement)

Chromosome 17 - NC_072465.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 1a Neighboring gene uncharacterized LOC129106456 Neighboring gene blue-sensitive opsin-like Neighboring gene blue-sensitive opsin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072465.1 Chromosome 17 Reference Afim_UVic_2022

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Afim_UVic_2022

Genomic

  1. NC_072465.1 Reference Afim_UVic_2022

    Range
    6707918..6720458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054617866.1 → XP_054473841.1  host cell factor 1a

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases