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pikfyve phosphoinositide kinase, FYVE finger containing [ Anoplopoma fimbria (sablefish) ]

Gene ID: 129104357, updated on 26-Mar-2024

Summary

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Gene symbol
pikfyve
Gene description
phosphoinositide kinase, FYVE finger containing
Gene type
protein coding
RefSeq status
MODEL
Organism
Anoplopoma fimbria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
Orthologs
human zebrafish all
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Genomic context

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See pikfyve in Genome Data Viewer
Location:
chromosome: 16
Exon count:
45
Annotation release Status Assembly Chr Location
RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 16 NC_072464.1 (21615996..21649135, complement)

Chromosome 16 - NC_072464.1Genomic Context describing neighboring genes Neighboring gene splicing factor 3b, subunit 1 Neighboring gene ankyrin repeat domain 44 Neighboring gene uncharacterized protein C2orf80-like Neighboring gene shugoshin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072464.1 Chromosome 16 Reference Afim_UVic_2022

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-phosphate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 3-phosphate 5-kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Afim_UVic_2022

Genomic

  1. NC_072464.1 Reference Afim_UVic_2022

    Range
    21615996..21649135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054615012.1 → XP_054470987.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X3

  2. XM_054615011.1 → XP_054470986.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X3

  3. XM_054615014.1 → XP_054470989.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X5

  4. XM_054615010.1 → XP_054470985.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X2

  5. XM_054615013.1 → XP_054470988.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X4

  6. XM_054615009.1 → XP_054470984.1  1-phosphatidylinositol 3-phosphate 5-kinase isoform X1

Nucleotide Protein
Heading Accession and Version

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