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syngr1a synaptogyrin 1a [ Anoplopoma fimbria (sablefish) ]

Gene ID: 129096375, updated on 26-Mar-2024

Summary

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Gene symbol
syngr1a
Gene description
synaptogyrin 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Anoplopoma fimbria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
Orthologs
human zebrafish all
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Genomic context

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See syngr1a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 9 NC_072457.1 (1381068..1398791, complement)

Chromosome 9 - NC_072457.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase b Neighboring gene TGF-beta activated kinase 1/MAP3K7 binding protein 1 Neighboring gene intraflagellar transport 27 homolog (Chlamydomonas) Neighboring gene voltage-dependent calcium channel gamma-2 subunit-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072457.1 Chromosome 9 Reference Afim_UVic_2022

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in neuromuscular junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptogyrin-1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Afim_UVic_2022

Genomic

  1. NC_072457.1 Reference Afim_UVic_2022

    Range
    1381068..1398791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054605142.1 → XP_054461117.1  synaptogyrin-1a

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases