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inpp5d inositol polyphosphate-5-phosphatase D [ Anoplopoma fimbria (sablefish) ]

Gene ID: 129094414, updated on 26-Mar-2024

Summary

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Gene symbol
inpp5d
Gene description
inositol polyphosphate-5-phosphatase D
Gene type
protein coding
RefSeq status
MODEL
Organism
Anoplopoma fimbria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Anoplopomatales; Anoplopomatidae; Anoplopoma
Orthologs
human zebrafish all
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Genomic context

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See inpp5d in Genome Data Viewer
Location:
chromosome: 8
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_03 current Afim_UVic_2022 (GCF_027596085.1) 8 NC_072456.1 (2096570..2108796, complement)

Chromosome 8 - NC_072456.1Genomic Context describing neighboring genes Neighboring gene BCL6A transcription repressor a Neighboring gene smx5 Neighboring gene unconventional myosin-VIIa Neighboring gene G protein-coupled receptor 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072456.1 Chromosome 8 Reference Afim_UVic_2022

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene. Rondeau EB, et al. BMC Genomics, 2013 Jul 6. PMID 23829495, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027596085.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Afim_UVic_2022

Genomic

  1. NC_072456.1 Reference Afim_UVic_2022

    Range
    2096570..2108796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054602579.1 → XP_054458554.1  phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

Nucleotide Protein
Heading Accession and Version

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