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ZBED1 zinc finger BED-type containing 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 129052877, updated on 26-Mar-2024

Summary

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Gene symbol
ZBED1
Gene description
zinc finger BED-type containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human all
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Genomic context

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See ZBED1 in Genome Data Viewer
Location:
chromosome: X, chromosome: Y
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) X NC_072008.2 (2083468..2098099, complement)
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) Y NC_072009.2 (2129003..2143588, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) X NC_072008.1 (2084746..2098067, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) Y NC_072009.1 (2130300..2143621, complement)

Chromosome X - NC_072008.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129052876 Neighboring gene dehydrogenase/reductase X-linked Neighboring gene basic proline-rich protein-like Neighboring gene translationally-controlled tumor protein-like Neighboring gene uncharacterized LOC129053355

Chromosome Y - NC_072009.2Genomic Context describing neighboring genes Neighboring gene acetylserotonin O-methyltransferase Neighboring gene uncharacterized LOC129053390 Neighboring gene dehydrogenase/reductase X-linked Neighboring gene translationally-controlled tumor protein-like Neighboring gene uncharacterized LOC129053355

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 SUMO-protein ligase ZBED1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072008.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    2083468..2098099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054544273.2 → XP_054400248.1  E3 SUMO-protein ligase ZBED1

  2. XM_054544274.2 → XP_054400249.1  E3 SUMO-protein ligase ZBED1

  3. XM_054544276.2 → XP_054400251.1  E3 SUMO-protein ligase ZBED1

  4. XM_054544275.2 → XP_054400250.1  E3 SUMO-protein ligase ZBED1

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072009.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    2129003..2143588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024241544.3 → XP_024097312.2  E3 SUMO-protein ligase ZBED1

  2. XM_024241545.3 → XP_024097313.2  E3 SUMO-protein ligase ZBED1

  3. XM_054545428.2 → XP_054401403.1  E3 SUMO-protein ligase ZBED1

Nucleotide Protein
Heading Accession and Version

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