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LOC128924721 CapStarr-seq enhancer MGSCv37_chr2:165715911-165716111 [ Mus musculus (house mouse) ]

Gene ID: 128924721, updated on 8-Feb-2024

Summary

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Gene symbol
LOC128924721
Gene description
CapStarr-seq enhancer MGSCv37_chr2:165715911-165716111
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr367370
Summary
This genomic region was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. It was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in NIH3T3 fibroblasts. [provided by RefSeq, Mar 2023]
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Genomic context

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See LOC128924721 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (165732331..165732531)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene EYA transcriptional coactivator and phosphatase 2 Neighboring gene predicted gene, 29993 Neighboring gene STARR-seq mESC enhancer starr_06353 Neighboring gene STARR-positive B cell enhancer ABC_E4519 Neighboring gene STARR-seq mESC enhancer starr_06355 Neighboring gene zinc finger, MYND-type containing 8 Neighboring gene STARR-seq mESC enhancer starr_06364 Neighboring gene RIKEN cDNA 1810021M19 gene Neighboring gene STARR-positive B cell enhancer ABC_E4520 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:165711164-165711317 Neighboring gene STARR-positive B cell enhancer ABC_E647 Neighboring gene STARR-seq mESC enhancer starr_06368 Neighboring gene predicted gene 11465 Neighboring gene STARR-seq mESC enhancer starr_06369 Neighboring gene STARR-positive B cell enhancer mm9_chr2:165748103-165748404 Neighboring gene STARR-positive B cell enhancer ABC_E11174 Neighboring gene STARR-seq mESC enhancer starr_06371 Neighboring gene STARR-seq mESC enhancer starr_06372 Neighboring gene STARR-seq mESC enhancer starr_06373 Neighboring gene predicted gene 11462 Neighboring gene pluripotency associated transcript 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Vanhille L, et al. Nat Commun, 2015 Apr 15. PMID 25872643

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 367370

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_150473.1 

    Range
    101..301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    165732331..165732531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version