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LOC128924685 CapStarr-seq enhancer MGSCv37_chr2:152642211-152642412 [ Mus musculus (house mouse) ]

Gene ID: 128924685, updated on 8-Feb-2024

Summary

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Gene symbol
LOC128924685
Gene description
CapStarr-seq enhancer MGSCv37_chr2:152642211-152642412
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr367335
Summary
This genomic region was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. It was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing strong activity in P5424 T cells and weak activity in NIH3T3 fibroblasts. [provided by RefSeq, Mar 2023]
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Genomic context

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See LOC128924685 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (152658395..152658596)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 32057 Neighboring gene cytochrome c oxidase subunit 4I2 Neighboring gene STARR-seq mESC enhancer starr_06077 Neighboring gene BCL2-like 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:152614671-152614780 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:152615325-152615529 Neighboring gene STARR-seq mESC enhancer starr_06078 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:152620177-152620625 Neighboring gene STARR-seq mESC enhancer starr_06080 Neighboring gene predicted gene, 32211 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:152642094-152642203 Neighboring gene STARR-seq mESC enhancer starr_06082 Neighboring gene STARR-positive B cell enhancer mm9_chr2:152651505-152651806 Neighboring gene STARR-positive B cell enhancer mm9_chr2:152656963-152657264 Neighboring gene STARR-positive B cell enhancer ABC_E514 Neighboring gene TPX2, microtubule-associated Neighboring gene microRNA 5622 Neighboring gene STARR-seq mESC enhancer starr_06083 Neighboring gene STARR-positive B cell enhancer ABC_E10154 Neighboring gene myosin, light polypeptide kinase 2, skeletal muscle

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Vanhille L, et al. Nat Commun, 2015 Apr 15. PMID 25872643

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 367335

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_150438.1 

    Range
    101..302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    152658395..152658596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version