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LOC128924378 CapStarr-seq enhancer MGSCv37_chr1:158868943-158869130 [ Mus musculus (house mouse) ]

Gene ID: 128924378, updated on 8-Feb-2024

Summary

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Gene symbol
LOC128924378
Gene description
CapStarr-seq enhancer MGSCv37_chr1:158868943-158869130
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr367037
Summary
This genomic region was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. It was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in P5424 T cells and NIH3T3 fibroblasts. [provided by RefSeq, Mar 2023]
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Genomic context

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See LOC128924378 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (156766382..156766569)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene PCNA-associated factor pseudogene Neighboring gene Ral GEF with PH domain and SH3 binding motif 2 Neighboring gene angiopoietin-like 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:158834070-158834253 Neighboring gene STARR-positive B cell enhancer ABC_E2572 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:158863932-158864133 Neighboring gene RIKEN cDNA 4930439D14 gene Neighboring gene STARR-positive B cell enhancer ABC_E9487 Neighboring gene STARR-seq mESC enhancer starr_02758 Neighboring gene STARR-positive B cell enhancer ABC_E5828 Neighboring gene STARR-positive B cell enhancer ABC_E4364 Neighboring gene STARR-seq mESC enhancer starr_02759 Neighboring gene STARR-positive B cell enhancer ABC_E2573 Neighboring gene STARR-positive B cell enhancer ABC_E3318 Neighboring gene predicted gene, 39685 Neighboring gene STARR-positive B cell enhancer ABC_E1569 Neighboring gene STARR-positive B cell enhancer mm9_chr1:158957909-158958210 Neighboring gene STARR-seq mESC enhancer starr_02761 Neighboring gene STARR-positive B cell enhancer ABC_E7762 Neighboring gene STARR-positive B cell enhancer ABC_E1232 Neighboring gene STARR-seq mESC enhancer starr_02762 Neighboring gene STARR-positive B cell enhancer ABC_E7763 Neighboring gene predicted gene, 30568

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Vanhille L, et al. Nat Commun, 2015 Apr 15. PMID 25872643

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 367037

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_150154.1 

    Range
    101..288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    156766382..156766569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version