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OGDH oxoglutarate dehydrogenase [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128919549, updated on 3-Aug-2024

Summary

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Gene symbol
OGDH
Gene description
oxoglutarate dehydrogenase
See related
EnsemblRapid:ENSRTRG00005016130
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
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Genomic context

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See OGDH in Genome Data Viewer
Location:
chromosome: 20
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) 20 NC_071485.1 (1133097..1167869)

Chromosome 20 - NC_071485.1Genomic Context describing neighboring genes Neighboring gene cytoskeleton associated protein 2 like Neighboring gene interleukin-1 receptor antagonist protein-like Neighboring gene zinc finger MIZ-type containing 2 Neighboring gene peptidylprolyl isomerase A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071485.1 Chromosome 20 Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate dehydrogenase complex component E1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071485.1 Reference bRisTri1.patW.cur.20221130

    Range
    1133097..1167869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054224827.1 → XP_054080802.1  2-oxoglutarate dehydrogenase complex component E1 isoform X1

  2. XM_054224828.1 → XP_054080803.1  2-oxoglutarate dehydrogenase complex component E1 isoform X1

  3. XM_054224833.1 → XP_054080808.1  2-oxoglutarate dehydrogenase complex component E1 isoform X2

  4. XM_054224835.1 → XP_054080810.1  2-oxoglutarate dehydrogenase complex component E1 isoform X4

  5. XM_054224829.1 → XP_054080804.1  2-oxoglutarate dehydrogenase complex component E1 isoform X1

  6. XM_054224826.1 → XP_054080801.1  2-oxoglutarate dehydrogenase complex component E1 isoform X1

  7. XM_054224834.1 → XP_054080809.1  2-oxoglutarate dehydrogenase complex component E1 isoform X3

    UniProtKB/TrEMBL
    A0A7L3TAF8
    Related
    ENSRTRP00005020425.1, ENSRTRT00005022474.1

  8. XM_054224831.1 → XP_054080806.1  2-oxoglutarate dehydrogenase complex component E1 isoform X1

  9. XM_054224830.1 → XP_054080805.1  2-oxoglutarate dehydrogenase complex component E1 isoform X1

RNA

  1. XR_008469903.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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