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SDC4 syndecan 4 [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128916457, updated on 3-Aug-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
See related
EnsemblRapid:ENSRTRG00005006635
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) 12 NC_071477.1 (11408469..11434439, complement)

Chromosome 12 - NC_071477.1Genomic Context describing neighboring genes Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene uncharacterized LOC128916843 Neighboring gene neuritin-like Neighboring gene SYS1 golgi trafficking protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071477.1 Chromosome 12 Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071477.1 Reference bRisTri1.patW.cur.20221130

    Range
    11408469..11434439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054218185.1 → XP_054074160.1  syndecan-4 isoform X3

  2. XM_054218184.1 → XP_054074159.1  syndecan-4 isoform X2

    Related
    ENSRTRP00005008625.1, ENSRTRT00005009241.1

  3. XM_054218183.1 → XP_054074158.1  syndecan-4 isoform X1

    Related
    ENSRTRP00005008618.1, ENSRTRT00005009234.1
Nucleotide Protein
Heading Accession and Version

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