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PKD1 polycystin 1, transient receptor potential channel interacting [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128913276, updated on 3-Aug-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
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Genomic context

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See PKD1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
46
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) 8 NC_071473.1 (7264649..7363337, complement)

Chromosome 8 - NC_071473.1Genomic Context describing neighboring genes Neighboring gene NHERF family PDZ scaffold protein 2 Neighboring gene nth like DNA glycosylase 1 Neighboring gene TSC complex subunit 2 Neighboring gene RAB26, member RAS oncogene family Neighboring gene uncharacterized LOC128914075 Neighboring gene small nucleolar RNA SNORD60

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071473.1 Chromosome 8 Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071473.1 Reference bRisTri1.patW.cur.20221130

    Range
    7264649..7363337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054210488.1 → XP_054066463.1  polycystin-1 isoform X3

  2. XM_054210486.1 → XP_054066461.1  polycystin-1 isoform X2

  3. XM_054210485.1 → XP_054066460.1  polycystin-1 isoform X1

Nucleotide Protein
Heading Accession and Version

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