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RPE ribulose-5-phosphate-3-epimerase [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128913156, updated on 3-Aug-2024

Summary

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Gene symbol
RPE
Gene description
ribulose-5-phosphate-3-epimerase
See related
EnsemblRapid:ENSRTRG00005007971
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
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Genomic context

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See RPE in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) 7 NC_071472.1 (40007639..40017232)

Chromosome 7 - NC_071472.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 2 Neighboring gene unc-80 homolog, NALCN channel complex subunit Neighboring gene KAT8 regulatory NSL complex subunit 1 like Neighboring gene acyl-CoA dehydrogenase long chain Neighboring gene myosin light chain 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071472.1 Chromosome 7 Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-ribulose-phosphate 3-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribulose-phosphate 3-epimerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071472.1 Reference bRisTri1.patW.cur.20221130

    Range
    40007639..40017232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054210262.1 → XP_054066237.1  ribulose-phosphate 3-epimerase isoform X3

  2. XM_054210261.1 → XP_054066236.1  ribulose-phosphate 3-epimerase isoform X2

  3. XM_054210260.1 → XP_054066235.1  ribulose-phosphate 3-epimerase isoform X1

    Related
    ENSRTRP00005010354.1, ENSRTRT00005011152.1

  4. XM_054210263.1 → XP_054066238.1  ribulose-phosphate 3-epimerase isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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