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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128911887, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
EnsemblRapid:ENSRTRG00005012204
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) 1 NC_071466.1 (153118937..153270229, complement)

Chromosome 1 - NC_071466.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128908208 Neighboring gene zinc finger protein 501-like Neighboring gene ovochymase 1 Neighboring gene importin 8 Neighboring gene caprin family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071466.1 Chromosome 1 Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071466.1 Reference bRisTri1.patW.cur.20221130

    Range
    153118937..153270229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054207465.1 → XP_054063440.1  protein O-mannosyl-transferase TMTC1 isoform X2

  2. XM_054207460.1 → XP_054063435.1  protein O-mannosyl-transferase TMTC1 isoform X1

    Related
    ENSRTRP00005015812.1, ENSRTRT00005017125.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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