U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CLGN calmegin [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128910257, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
CLGN
Gene description
calmegin
See related
EnsemblRapid:ENSRTRG00005000609
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CLGN in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) 5 NC_071470.1 (70941816..70972787, complement)

Chromosome 5 - NC_071470.1Genomic Context describing neighboring genes Neighboring gene microsomal glutathione S-transferase 2 Neighboring gene mastermind like transcriptional coactivator 3 Neighboring gene short coiled-coil protein Neighboring gene uncharacterized LOC128910072 Neighboring gene MGAT4 family member D

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_071470.1 Chromosome 5 Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calmegin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071470.1 Reference bRisTri1.patW.cur.20221130

    Range
    70941816..70972787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054203249.1 → XP_054059224.1  calmegin isoform X2

  2. XM_054203248.1 → XP_054059223.1  calmegin isoform X1

    Related
    ENSRTRP00005000770.1, ENSRTRT00005000837.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.