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PKD2 polycystin 2, transient receptor potential cation channel [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128909820, updated on 3-Aug-2024

Summary

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Gene symbol
PKD2
Gene description
polycystin 2, transient receptor potential cation channel
See related
EnsemblRapid:ENSRTRG00005017203
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
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Genomic context

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See PKD2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) 5 NC_071470.1 (75848108..75885648, complement)

Chromosome 5 - NC_071470.1Genomic Context describing neighboring genes Neighboring gene placenta-specific gene 8 protein-like Neighboring gene placenta associated 8 Neighboring gene ATP binding cassette subfamily G member 2 (JR blood group) Neighboring gene secreted phosphoprotein 1 Neighboring gene matrix extracellular phosphoglycoprotein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071470.1 Chromosome 5 Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated sodium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in release of sequestered calcium ion into cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071470.1 Reference bRisTri1.patW.cur.20221130

    Range
    75848108..75885648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054202091.1 → XP_054058066.1  polycystin-2 isoform X3

  2. XM_054202090.1 → XP_054058065.1  polycystin-2 isoform X2

  3. XM_054202089.1 → XP_054058064.1  polycystin-2 isoform X1

    Related
    ENSRTRP00005021886.1, ENSRTRT00005024152.1

  4. XM_054202092.1 → XP_054058067.1  polycystin-2 isoform X4

RNA

  1. XR_008466530.1 RNA Sequence

  2. XR_008466529.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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