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CHST1 carbohydrate sulfotransferase 1 [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128909653, updated on 3-Aug-2024

Summary

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Gene symbol
CHST1
Gene description
carbohydrate sulfotransferase 1
See related
EnsemblRapid:ENSRTRG00005014473
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
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Genomic context

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See CHST1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) 4 NC_071469.1 (46065656..46074925, complement)

Chromosome 4 - NC_071469.1Genomic Context describing neighboring genes Neighboring gene embryonic protein UVS.2-like Neighboring gene transmembrane protein 263-like Neighboring gene solute carrier family 35 member C1 Neighboring gene cryptochrome circadian regulator 2 Neighboring gene mitogen-activated protein kinase 8 interacting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071469.1 Chromosome 4 Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071469.1 Reference bRisTri1.patW.cur.20221130

    Range
    46065656..46074925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054201605.1 → XP_054057580.1  carbohydrate sulfotransferase 1

    UniProtKB/TrEMBL
    A0A7L3SG40
    Related
    ENSRTRP00005018335.1, ENSRTRT00005020154.1
Nucleotide Protein
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