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HS3ST5 heparan sulfate-glucosamine 3-sulfotransferase 5 [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128907635, updated on 3-Aug-2024

Summary

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Gene symbol
HS3ST5
Gene description
heparan sulfate-glucosamine 3-sulfotransferase 5
See related
EnsemblRapid:ENSRTRG00005012506
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
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Genomic context

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See HS3ST5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) 3 NC_071468.1 (74078060..74273560)

Chromosome 3 - NC_071468.1Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase domain containing 1 Neighboring gene collagen type X alpha 1 chain Neighboring gene fyn related Src family tyrosine kinase Neighboring gene histone deacetylase 2 Neighboring gene myristoylated alanine rich protein kinase C substrate

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071468.1 Chromosome 3 Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071468.1 Reference bRisTri1.patW.cur.20221130

    Range
    74078060..74273560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054196733.1 → XP_054052708.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

    UniProtKB/TrEMBL
    A0A7L3SJC9

  2. XM_054196734.1 → XP_054052709.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

    UniProtKB/TrEMBL
    A0A7L3SJC9

  3. XM_054196732.1 → XP_054052707.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

    UniProtKB/TrEMBL
    A0A7L3SJC9
    Related
    ENSRTRP00005016173.1, ENSRTRT00005017540.1

  4. XM_054196735.1 → XP_054052710.1  heparan sulfate glucosamine 3-O-sulfotransferase 5

    UniProtKB/TrEMBL
    A0A7L3SJC9

RNA

  1. XR_008465681.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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