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PGM5 phosphoglucomutase 5 [ Rissa tridactyla (black-legged kittiwake) ]

Gene ID: 128902206, updated on 3-Aug-2024

Summary

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Gene symbol
PGM5
Gene description
phosphoglucomutase 5
See related
EnsemblRapid:ENSRTRG00005009604
Gene type
protein coding
RefSeq status
MODEL
Organism
Rissa tridactyla
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Laridae; Rissa
Orthologs
human mouse all
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Genomic context

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See PGM5 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current bRisTri1.patW.cur.20221130 (GCF_028500815.1) Z NC_071497.1 (58511906..58592332)

Chromosome Z - NC_071497.1Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis 8 Neighboring gene Zn regulated GTPase metalloprotein activator 1A Neighboring gene microtubule associated protein 1B Neighboring gene mitochondrial ribosomal protein S27 Neighboring gene pentatricopeptide repeat domain 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071497.1 Chromosome Z Reference bRisTri1.patW.cur.20221130

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoglucomutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in striated muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell-substrate junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoglucomutase-like protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028500815.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bRisTri1.patW.cur.20221130

Genomic

  1. NC_071497.1 Reference bRisTri1.patW.cur.20221130

    Range
    58511906..58592332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054184707.1 → XP_054040682.1  phosphoglucomutase-like protein 5

    UniProtKB/TrEMBL
    A0A7L3T174
    Related
    ENSRTRP00005012437.1, ENSRTRT00005013460.1
Nucleotide Protein
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