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rrp8 ribosomal RNA processing 8 [ Synchiropus splendidus (mandarinfish) ]

Gene ID: 128763968, updated on 10-Apr-2024

Summary

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Gene symbol
rrp8
Gene description
ribosomal RNA processing 8
See related
EnsemblRapid:ENSSSDG00005020960
Gene type
protein coding
RefSeq status
MODEL
Organism
Synchiropus splendidus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Callionymoidei; Callionymidae; Synchiropus
Orthologs
human zebrafish all
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Genomic context

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See rrp8 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current RoL_Sspl_1.0 (GCF_027744825.2) 8 NC_071341.1 (14121739..14125964, complement)

Chromosome 8 - NC_071341.1Genomic Context describing neighboring genes Neighboring gene hemicentin-1 Neighboring gene nectin cell adhesion molecule 3a Neighboring gene integrin-linked protein kinase Neighboring gene amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) Neighboring gene roundabout, axon guidance receptor, homolog 1 (Drosophila)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071341.1 Chromosome 8 Reference RoL_Sspl_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to glucose starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rDNA heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by glucose IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin silencing complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of rDNA heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein rrp8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027744825.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RoL_Sspl_1.0 Primary Assembly

Genomic

  1. NC_071341.1 Reference RoL_Sspl_1.0 Primary Assembly

    Range
    14121739..14125964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053873278.1 → XP_053729253.1  uncharacterized protein rrp8

  2. XM_053873279.1 → XP_053729254.1  uncharacterized protein rrp8

  3. XM_053873277.1 → XP_053729252.1  uncharacterized protein rrp8

    Related
    ENSSSDP00005032950.1, ENSSSDT00005036386.1

  4. XM_053873276.1 → XP_053729251.1  uncharacterized protein rrp8

  5. XM_053873275.1 → XP_053729250.1  uncharacterized protein rrp8

Nucleotide Protein
Heading Accession and Version

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