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RPS18P1 ribosomal protein S18 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 128676, updated on 17-Sep-2024

Summary

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Official Symbol
RPS18P1provided by HGNC
Official Full Name
ribosomal protein S18 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:16550
See related
Ensembl:ENSG00000225831 AllianceGenome:HGNC:16550
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
dJ1022P6.1; RPS18_9_1682
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Genomic context

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See RPS18P1 in Genome Data Viewer
Location:
20p12.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (5532878..5533335)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (5573558..5574015)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (5513524..5513981)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904863 Neighboring gene long intergenic non-protein coding RNA 654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17518 Neighboring gene long intergenic non-protein coding RNA 1729 Neighboring gene NANOG hESC enhancer GRCh37_chr20:5509506-5510047 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17519 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17520 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:5533770-5534499 Neighboring gene glycerophosphocholine phosphodiesterase 1 Neighboring gene eukaryotic translation initiation factor 4E pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 4324 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12656 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:5590486-5591358 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:5606161-5606662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17521 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17524 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17525 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17526 Neighboring gene uncharacterized LOC124904864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:5637190-5637690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:5637691-5638191

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. Nagase T, et al. DNA Res, 2000 Feb 28. PMID 10718198
  2. The DNA sequence and comparative analysis of human chromosome 20. Deloukas P, et al. Nature, 2001 Dec 20-27. PMID 11780052
  3. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000970.3 

    Range
    101..558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    5532878..5533335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    5573558..5574015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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