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c1galt1la core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a [ Ictalurus furcatus (blue catfish) ]

Gene ID: 128619460, updated on 10-Jul-2024

Summary

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Gene symbol
c1galt1la
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a
See related
EnsemblRapid:ENSIFRG00005015249
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus furcatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See c1galt1la in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current Billie_1.0 (GCF_023375685.1) 15 NC_071269.1 (21021393..21037644)

Chromosome 15 - NC_071269.1Genomic Context describing neighboring genes Neighboring gene beta-1,4 N-acetylgalactosaminyltransferase 1-like Neighboring gene beta-1,4 N-acetylgalactosaminyltransferase 1-like Neighboring gene tachykinin precursor 3a Neighboring gene zinc finger protein 385A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_071269.1 Chromosome 15 Reference Billie_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023375685.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Billie_1.0 Primary Assembly

Genomic

  1. NC_071269.1 Reference Billie_1.0 Primary Assembly

    Range
    21021393..21037644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053643660.1 → XP_053499635.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A isoform X1

  2. XM_053643659.1 → XP_053499634.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A isoform X1

  3. XM_053643658.1 → XP_053499633.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A isoform X1

    Related
    ENSIFRP00005039602.1, ENSIFRT00005042912.1

  4. XM_053643657.1 → XP_053499632.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A isoform X1

    Related
    ENSIFRP00005039601.1, ENSIFRT00005042911.1

  5. XM_053643661.1 → XP_053499636.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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